Sliceomatic software

The list is split in 3 parts: papers in Body Composition , in Cancer Research and papers using the 3D modules of sliceOmatic.

Overview Automatic Segmentation Features Speed Additional Modules Overview sliceOmatic, is an easy-to-use, powerful and affordable medical image analysis software that enhances researchers' ability to measure, segment and analyze multi-slice scanner data.

Its evolution is based on years of collaboration between the programmers and the researchers who use it. SliceOmatic offers you the best segmentation process to date. With sliceOmatic, morphological operators can effortlessly perform tissue segmentation. Furthermore, studies have proven that this technique is generating consistent results.

But don't take our word for it, download sliceOmatic and the additional ABACS module from this web site and try it out for yourself! Without a license the program does have a few limitations it will not let you save any results but you can take it for a spin and see how easy it is to segment your data with it. It is used by satisfied customers around the world: "Ah, SliceOmatic is a work of art! With the simple click of a button, the ABACS Automated Body composition Analyzer using Computed tomography image Segmentation module will identify and tag the muscle, sub-cutaneous, visceral and intra abdominal fat on all the L3 or T4 slices you have selected, without any further user intervention.

It can analyze any axial CT slices from T1 to the Sacrum. Features The usual tools: SliceOmatic has, of course, all the usual tools that any good image analisys program should offer. These include tools to view the images in any direction in multiple windows, tools to filter the images, tools to measure distances, angles and surfaces on the images, and a lot more of the "basic" stuff.

SliceOmatic's Segmentation: The process of identifying each tissue inside an image is known as "segmentation". Flexibility: The wide range of formats that sliceOmatic supports makes it an ideal tool to both view and analyze all your images. Speed Getting accurate values faster: In a technical publication, Dr Bonekamp and his colleagues compared sliceOmatic with 4 other image analysis packages.

Not only did they found that sliceOmatic was among the easiest to use and had the best graphical user interface, but they also found that segmenting adipose and visceral fat with sliceOmatic was at least 3 time faster than with any of the other software. Additional Modules SliceOmatic new structure is designed to allow easy integration with new modules. Anybody using the free SDK provided in the download pages can add modules to the program. A number of these new modules can be download from our website pages.

Some of these are presented further down. For a more exhaustive list, please consult the online manual. If you want to add a module to the program, just let us know and we will provide you with any help you may require. Some of the Additional Modules available:. It can be used to read files and perform scripts for each files, or perform scripts for each frames, or simply perform scripts a number of times.

For example it can be used to take one snapshot of each frames, or to create an animation of a 3D object rotating, or in an industrial setting, automate the analysis of images acquire from a continuous process.

For more information, please consult the sliceOmatic 5. Tool: CT Gradient This tool is used to limit the gradient computation to a threshold range. For CT images, we can also limit the gradient computation to a desired threshold, this give us a better segmentation.

You can either compare these tags with the DICOM definition for the same modality or with the tags of another frame. The 4 tags that are defined in the interface of the "DICOM Info" tool will be seen by the configuration page of the "2D Results" tool and can be selected.

If some of the 4 tags are selected for the result file, the value of these DICOM tags, for each selected slice, will be saved in the Excel result file. You should see your key Sentinel HL Time. In the "actions" section, click the "C2V" button to generate the file. We will then email you back a "V2C" file. Your dongle is now remote enabled. What can I do if I get the message "Unable to display tool! This is a simple enough problem.

Another solution is to change the display resolution: right click the mouse with the pointer over the windows background not over any windows , in the pop-up, select Properties, then "Settings" and from there increase the display resolution depending on your screen, you may or may not be able to do this What 3D formats does sliceOmatic support for import?

BYU format and old polygon format used by many systems ;. What 3D formats does sliceOmatic support for export? The software does not export IGES files, but most software will be able to import one of the format used by sliceOmatic. What is the best way to segment my images? That's a tough one It does depend a lot on the type of images you want to analyze. For example, if you want to segment the different fat tissues in an abdominal image either CT or MR , I would suggest the following: For the sub-cutaneous fat, use Morpho, then use the "Tag Lock" tool to protect what you have done and use the "Paint" sub-mode of region growing to segment the intra abdominal fat.

If, on the other hand, you want to segment the bones in a knee, I would suggest using the Snake mode. But even then it does depend on a lot of variables like the type and quality of the images My best suggestion would be to try different technique and see which one you prefer.

I want to use sliceOmatic in a blind study. How can I prevent the user from seeing the patient's name? In the configuration menu, you can set the "Anonymouse settings" to "ON". If you select this option, the patient information will not be displayed in sliceOmatic.

I have a refresh problem. In some modes like Edit the screen is not always updated. Starting with Windows 7, some graphic cards have problems with the OpenGL double buffer.

Requirement: This revision of the classes is compatible with sliceOmatic 5. Requirement: This revision of the tools is compatible with sliceOmatic 5. But if you need it, you can also get a copy here. Note: You don't need a license to evaluate sliceOmatic! However, without a license the program will have some limitations. See the ordering page for complete information. Download now.